Quick Sourdough Apple Cider Mini Muffins Fresh Milled Flour
The first crisp breeze of fall always sparks some baking inspiration. Cue these adorable apple cider mini muffins. They’re cozy, oh-so delicious, and perfect for the cooler season.
They’re the best bite-sized way to turn fresh-milled flour and apple cider into the cutest little treats.

When I make these Sourdough Apple Cider Mini Muffins they are gone in 24 hours. Of course, we have to kick off fall with these tiny treats. And the best part? Super quick and easy!
Try making some of our other tasty muffin recipes like Zucchini Muffins, Sourdough Chocolate Chip Banana Muffins, or Pumpkin Raisin & Pecan Muffins.
This post contains affiliate links. As an Amazon associate or other affiliate, I earn from qualifying purchases. We try to recommend products we personally use or have used and trust. If you choose to purchase through our links in this post, we may receive a commission, at no extra cost to you. Read the full disclosure here.
Why You’ll Love This Recipe
It’s both nourishing and nostalgic. Fresh milled whole wheat brings real flavor plus nutrition and warms your soul to boot. Add in sourdough’s little tang and a little warm spice with the sweetness of apple and you’ve got the perfect bite.
Utterly pop-able, they’ll be gone too soon. You may just find yourself making double batches, and it’s the perfect way to use up all that extra apple cider (or apple juice) you’ve got from making apple sauce.
Sourdough Apple Cider Mini Muffins Recipe
Tools
- Saucepan
- Mini Muffin Pan
- Mixing Bowl
- Grain Mill
- Spatula
Ingredients
- 370g Apple Cider reduced to about 265g
- 1 Egg
- 65g Granulated Sugar
- 65g Brown Sugar
- 40g Coconut Oil melted
- 120g Whole Milk
- 250g Sourdough Discard
- 1 tsp Lemon Juice
- 1 teaspoon Vanilla Extract
- 225g Freshly Milled Soft Wheat
- 1 teaspoon Baking Powder
- ½ teaspoon Baking Soda
- 1/4 tsp Salt
- ¼ teaspoon Ginger Powder
- 1 teaspoon Cinnamon Powder
- 1/8tsp Allspice Powder
- 1/8 tsp Ground Cloves
Sugar topping (optional)
- 1/4 cup Granulated sugar
- 1 teaspoon Cinnamon
Step By Step Recipe
- Heat apple cider in a pot over medium heat until reduced. Let cool for about 15 minutes or until just warm.
- Preheat oven to 350 degrees and grease muffin pan
- Add sugars, oil, egg, milk, sourdough, lemon juice, and vanilla to a large bowl and mix well
- Add warm apple cider and stir
- Pour in flour, baking soda, baking powder, salt, and spices
- Combine but don’t over mix (this mixture will puff up a bit and will be looser than a traditional muffin batter- closer to pancake batter)
- Fill mini muffin tins and top with cinnamon sugar
- Bake 10-12 minutes or until a toothpick comes out mostly clean
- Cool in pan for a few minutes
- Remove muffins from pan and serve warm, or cool completely and freeze for later (I love having these on hand for a quick breakfast or snack)
Makes 48 mini muffins
Notes:
- This recipe works for regular-sized muffins too, just bake for 12-15 minutes and it makes about 12
- You can also use a donut pan, baking for 10-12 minutes and it makes about 12
- Feel free to use cupcake liners
- Dip these in Cinnamon Peach butter for a real Fall treat!
Variations & Tips
Fold in some chopped walnuts or pecans for a bit of texture or try swapping out half of the soft white with spelt. You can also try using maple sugar in place of brown sugar for even more fall flavor.
What else do you like to make with Apple Cider in the Fall? Let us know in the comments below.

Quick Sourdough Apple Cider Mini Muffins
These Apple Cider Mini Muffins come together quick and are gone almost as fast!
Ingredients
- 370g Apple Cider reduced to about 265g
- 1 Egg
- 65g Granulated Sugar
- 65g Brown Sugar
- 40g Coconut Oil melted
- 120g Whole Milk
- 250g Sourdough Discard
- 1 tsp Lemon Juice
- 1 teaspoon Vanilla Extract
- 225g Freshly Milled Soft Wheat (or all-purpose flour)
- 1 teaspoon Baking Powder
- ½ teaspoon Baking Soda
- 1/4 tsp Salt
- ¼ teaspoon Ginger Powder
- 1 teaspoon Cinnamon Powder
- 1/8tsp Allspice Powder
- 1/8 tsp Ground Cloves
- Sugar topping (optional)
- 1/4 cup Granulated sugar
- 1 teaspoon Cinnamon
Instructions
- Heat apple cider in a pot over medium heat until reduced. Let cool for about 15 minutes or until just warm.
- Preheat oven to 350 degrees and grease muffin pan
- Add sugars, oil, egg, milk, sourdough, lemon juice, and vanilla to a large bowl and mix well
- Add warm apple cider and stir
- Pour in flour, baking soda, baking powder, salt, and spices
- Combine but don’t over mix (this mixture will puff up a bit and will be looser than a traditional muffin batter- closer to pancake batter)
- Fill mini muffin tins and top with cinnamon sugar
- Bake 10-12 minutes or until a toothpick comes out mostly clean
- Cool in pan for a few minutes
- Remove muffins from pan and serve warm, or cool completely and freeze for later (I love having these on hand for a quick breakfast or snack)
Notes
This recipe works for regular-sized muffins too, just bake for 12-15 minutes and it makes about 12
You can also use a donut pan, baking for 10-12 minutes and it makes about 12
Feel free to use cupcake liners
Nutrition Information
Yield 12 Serving Size 4Amount Per Serving Calories 232Total Fat 5gSaturated Fat 3gTrans Fat 0gUnsaturated Fat 1gCholesterol 17mgSodium 280mgCarbohydrates 42gFiber 3gSugar 19gProtein 6g
*this has not been evaluated by the FDA
FAQS
Yes! Active or discard work just fine.
Store at room temperature in an airtight container for 2-3 days. You can also freeze for 2-3 months, letting them thaw at room temperature (or microwave) before eating.
Of course! Just know the flavor may not be as pronounced.
